PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta010529

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

HSF

Protein Properties

Length: 228aa MW: 25371.8 Da PI: 9.2483

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-53786	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	108.3	5.8e-34	26	118	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+y++++d++++++isw +n+++fvv+ ++ef+ +vLp+yF h+nf+SFvRQLn+YgF+k+ + + eF+++ F+kg+k+ll +i+ Pta010529 26 FLVKTYRLVDDPSTDHIISWGDNNSTFVVWCPKEFSASVLPSYFNHTNFSSFVRQLNTYGFRKIVRGR---------CEFANELFRKGQKHLLPHIQ 113 9*************************************************************9988.........67************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k + Pta010529 114 RRKPS 118 975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	4.2E-51	22	115	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	4.6E-36	24	115	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	3.48E-33	24	115	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	9.8E-19	26	49	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.2E-29	26	115	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.8E-19	64	76	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.8E-19	77	89	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MGEGGVVSDA RCRIARDAAR LVAAPFLVKT YRLVDDPSTD HIISWGDNNS TFVVWCPKEF 60 SASVLPSYFN HTNFSSFVRQ LNTYGFRKIV RGRCEFANEL FRKGQKHLLP HIQRRKPSTS 120 SAQMEYGNFS LFPPVSPTRH SDISTAATSL AEESETLKKK NSLLLSEIAH LKSICSRDIT 180 LFILQNSRGT SLADVDRSIH NVSPCSSTED VAKESSTSPP KLFGVPLY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	1e-21	26	120	20	125	Heat shock factor protein 1
5d5u_B	1e-21	1	115	3	129	Heat shock factor protein 1
5d5v_B	1e-21	1	115	3	129	Heat shock factor protein 1
5d5v_D	1e-21	1	115	3	129	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020583107.1	2e-58	heat stress transcription factor B-4b-like
Swissprot	Q9C635	3e-52	HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBL	H9WUJ6	5e-85	H9WUJ6_PINTA; Uncharacterized protein (Fragment)
STRING	POPTR_0001s28040.1	8e-58	(Populus trichocarpa)