PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta010613

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

Dof

Protein Properties

Length: 225aa MW: 24947.6 Da PI: 6.4199

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-38258	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	128.5	2e-40	130	190	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k l+cprCds +tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s+ Pta010613 130 PDKLLPCPRCDSLDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHST 190 78999*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-30	127	187	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.6E-33	132	188	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.929	134	188	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	136	172	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MKDPGFKLFG KTIPMRDGEK NEGLSGSKLG HENTDNITET PARVAQVSDK DVGKEISPDL 60 GREGPHNSNP EETRSVTVIS DCGEDECKKS DEDLEREGGS TAIESDLKSE NLEEKEAKAS 120 ENEEKMLKKP DKLLPCPRCD SLDTKFCYYN NYNVNQPRHF CKNCQRYWTA GGTMRNVPVG 180 AGRRKNKHST SHYRHMMMAD GLATARADAP DGAAHHQVIP NAHSS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020274549.1	1e-59	cyclic dof factor 3-like
TrEMBL	T2B8P6	1e-163	T2B8P6_PINPS; Dof10
STRING	VIT_14s0108g00980.t01	8e-57	(Vitis vinifera)
STRING	XP_004299352.1	3e-57	(Fragaria vesca)