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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Pta010627 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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| Family | Trihelix | ||||||||
| Protein Properties | Length: 225aa MW: 25470.8 Da PI: 7.3425 | ||||||||
| Description | Trihelix family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | trihelix | 39.4 | 1.6e-12 | 160 | 224 | 1 | 61 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeev....skkmrergferspkqCkekwenlnkry 61
+W+++ + +L++a++e+ +l+rg+l++ +Weev s+++++++ +s +qCk+k +nl+kry
Pta010627 160 EWSDSAIGCLLDAYTEKYVKLNRGNLRGRDWEEVacivSERCERQKSAKSIEQCKNKVDNLKKRY 224
5********************************822225666**********************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF13837 | 1.8E-14 | 158 | 224 | No hit | No description |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 225 aa Download sequence Send to blast |
DFVMLEAAHS HQAHQLPHHH HHHPQAFQSP QYLPNKQQQT LPHGHIDAHG INSVESRKKI 60 PGEDEDYSDA AFCSQGDPKC SPDFVQEIGP HHHHHHHECF GEEGFRTGDD VKPSGAKSRS 120 RAGQGKMKDS REELSDGGTY YHKKPKGGGG GGDYKKDREE WSDSAIGCLL DAYTEKYVKL 180 NRGNLRGRDW EEVACIVSER CERQKSAKSI EQCKNKVDNL KKRYX |
| Expression -- UniGene ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| UniGene ID | E-value | Expressed in | ||||
| Pta.13413 | 0.0 | root| xylem | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010243329.1 | 4e-53 | PREDICTED: uncharacterized protein LOC104587412 isoform X1 | ||||
| Refseq | XP_010243337.1 | 4e-53 | PREDICTED: uncharacterized protein LOC104587412 isoform X2 | ||||
| TrEMBL | A0A0D6R6P9 | 7e-86 | A0A0D6R6P9_ARACU; Uncharacterized protein | ||||
| STRING | XP_010243329.1 | 2e-52 | (Nelumbo nucifera) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G10030.2 | 7e-31 | Trihelix family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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