PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta010659
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family Trihelix
Protein Properties Length: 224aa    MW: 25659.5 Da    PI: 9.5014
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S26637023PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix31.64.4e-10124190267
   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikeg 67 
                W++  + +L+   ++m  +++rg+l k++W ++++++ ++   + s +qCk kw+ l+k y k k +
  Pta010659 124 WPNTAIDVLLLKFEDMCFNVSRGRLGKTHWGQIADAVnAACSANYSGVQCKYKWNRLKKSYNKAKLH 190
                9************************************45556688*****************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.5E-10124204No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MGDSVKTPQL LEEPSTTTYP YHQQPNKKKG SSSSIVEPES MTANHYNLHT VQQSPRASSS  60
QYHHQQHHLR SKQESIACIR SVLQNLMASP SIQSQNPNDN RTPLSLKRKE MTESSSRAQK  120
EALWPNTAID VLLLKFEDMC FNVSRGRLGK THWGQIADAV NAACSANYSG VQCKYKWNRL  180
KKSYNKAKLH GETSRFLFYK RVERIVHRAS GQKLHEEEEE EEEX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.231020.0root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5AEE51e-117D5AEE5_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.13e-08sequence-specific DNA binding transcription factors