PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta010749
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family bHLH
Protein Properties Length: 221aa    MW: 24585.6 Da    PI: 6.5678
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S26637933PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.44.5e-074322355
               HHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH 23 LrellPkaskapskKlsKaeiLekAveYIksLq 55
               L +llP++      K +K++i+e+A+ YIk Lq
  Pta010749  4 LHTLLPHL----PAKADKSTIVEEAISYIKTLQ 32
               7899***6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.835131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-4432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-7443IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-7443IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.04E-6436No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
RPGLHTLLPH LPAKADKSTI VEEAISYIKT LQQSLHVLEN QRLDKARSAT TLEFELSNTF  60
HELQQQQHHV SAAAMRSSSE TPGFYHPLIP ECSTSSGFEP WISKQYSRTI SAGSPAIDHC  120
NFFQTWSSPN VVLSVCGDDA HMMICSSPPK QGLLTTIFYT LEKHRVDVVT AHISSDSYRS  180
MYMIHAQAHT MVNTGDQFLD SKSSEEAFRS AAGELVIYLS S
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NQC21e-139A9NQC2_PICSI; Uncharacterized protein