PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta010790
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family WRKY
Protein Properties Length: 219aa    MW: 25204.1 Da    PI: 7.5292
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-64345PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.31.8e-29118175259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                +Dgy+WrKYG+K vk+s++pr+Y+rC+ ++C vkk ver+a+d+ +v++tY g+Hnhe
  Pta010790 118 EDGYKWRKYGKKFVKNSPNPRNYFRCSDNNCGVKKTVERDARDKAIVVTTYLGKHNHE 175
                8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-30106177IPR003657WRKY domain
SuperFamilySSF1182901.03E-26109177IPR003657WRKY domain
PROSITE profilePS5081129.207112177IPR003657WRKY domain
SMARTSM007745.7E-32117176IPR003657WRKY domain
PfamPF031062.1E-23118175IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MASFDLRHGH FQGAIRLFCK EQTQQMQEAN DSQHINQGAA AEPFEPSEFL VSDEEELDHS  60
CGSEHAVEQN YFNNVKPGSS IQSSETQETI SPKKNRKRKA ERGVKYAFLT RSDTDILEDG  120
YKWRKYGKKF VKNSPNPRNY FRCSDNNCGV KKTVERDARD KAIVVTTYLG KHNHESPSVI  180
YYTLRPEILV QVPRQTTGSP IEHFSPVCTY LPECFQQYQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-241101781078Probable WRKY transcription factor 4
2lex_A6e-241101781078Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.198180.0root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006842164.19e-39probable WRKY transcription factor 50
TrEMBLA0A0D6R4C92e-53A0A0D6R4C9_ARACU; Uncharacterized protein
STRINGERN038394e-38(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.12e-32WRKY DNA-binding protein 51