PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta010815
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MIKC_MADS
Protein Properties Length: 218aa    MW: 25112.9 Da    PI: 9.9713
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-44306PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.14.3e-271057249
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
               ri+n s r vtfs Rrng+lKKA+ELSvLCdaevavi+fss+gkly +
  Pta010815 10 RIDNASTRRVTFSTRRNGLLKKAYELSVLCDAEVAVIVFSSRGKLYGF 57
               8*********************************************98 PP
2K-box72.81e-24851711298
      K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                   e++ ++++kLkkei+ L ++ R+l+G++++sLs+keL +Le +Le+++  iR +K+++++++ ++ +k e++l  en+ Lr+k+
  Pta010815  85 PSLERCGNDITKLKKEIDILTNKSRKLMGDSISSLSMKELDELELRLERGIDCIRLQKDRIFVQENQTAKKLEEALIVENQFLRTKI 171
                56678889*****************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-35160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.025161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-28270IPR002100Transcription factor, MADS-box
CDDcd002653.86E-35270No hitNo description
PRINTSPR004041.2E-25323IPR002100Transcription factor, MADS-box
PfamPF003193.4E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-253859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.68287177IPR002487Transcription factor, K-box
PfamPF014861.9E-1888171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MGRRRIELRR IDNASTRRVT FSTRRNGLLK KAYELSVLCD AEVAVIVFSS RGKLYGFGSK  60
SVCRTIERYK ITGIKDAGWM QITEPSLERC GNDITKLKKE IDILTNKSRK LMGDSISSLS  120
MKELDELELR LERGIDCIRL QKDRIFVQEN QTAKKLEEAL IVENQFLRTK IGRYQKERSK  180
NTGSSYKEAY PQFHTLNLLP GLDEENSKQH SNICDFPG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-17195185MEF2C
5f28_B1e-17195185MEF2C
5f28_C1e-17195185MEF2C
5f28_D1e-17195185MEF2C
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0A6ZIN22e-67A0A0A6ZIN2_PICAB; MADS-domain transcription factor DAL20
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.15e-45MIKC_MADS family protein