PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta010896
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family bHLH
Protein Properties Length: 215aa    MW: 23954.1 Da    PI: 9.0374
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-56519PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.76.7e-164288455
               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Pta010896 42 VHNLSEKRRRNRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKKLQ 88
               6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.3E-203597IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-203597IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.8853887IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.57E-164192No hitNo description
PfamPF000102.4E-134288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-174493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
XVLMGTKDIE CQSQKAREDS GENFKQCSTG TSSSKRSRAA EVHNLSEKRR RNRINEKMKA  60
LQNLIPNSNK TDKASMLDEA IEYLKKLQLQ VQMLSARSGI DLSSMRWLAQ MPHLQIQQMP  120
KACMAIDQHA GVPISMPVGS GLINTNQGSE KRPLPLHDLY NSGALCNTAI PINLSSVRID  180
DHHSCKMDHP QGHFTLPQLP TTTQEVHSAL SLQEK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.345820.0root| shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001292767.15e-44transcription factor bHLH23
TrEMBLA9NSU41e-146A9NSU4_PICSI; Uncharacterized protein
STRINGERN179505e-42(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-34phytochrome interacting factor 3