PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta010963
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family ERF
Protein Properties Length: 213aa    MW: 23799.4 Da    PI: 10.5582
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-58582550PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.8e-203181155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               ++++GVr ++ +gr++AeIrdp +   ++r++lg+f+taeeAa+a+++a+++l+g
  Pta010963 31 THFRGVRKRP-WGRFAAEIRDPLK---KTRVWLGTFDTAEEAARAYDNAARNLRG 81
               589*******.**********743...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.07E-323188No hitNo description
PfamPF008471.1E-133181IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-223290IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.2E-323289IPR001471AP2/ERF domain
PROSITE profilePS5103222.6553289IPR001471AP2/ERF domain
SMARTSM003805.8E-383295IPR001471AP2/ERF domain
PRINTSPR003673.6E-113344IPR001471AP2/ERF domain
PRINTSPR003673.6E-115571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MAVHTMQMAR MEMKREIGVC EQEASSAVKE THFRGVRKRP WGRFAAEIRD PLKKTRVWLG  60
TFDTAEEAAR AYDNAARNLR GTKAKTNFGP SPLHDGKPLF NNGFSAQKRD SLRRPGLCPK  120
QEPAVPVLPS PDVQASTCVN IGNLSPNPAV EKQTVSNKKP MVLFGTHLSV SPRNLLLQQQ  180
QKEEICRSQG RRQAPLWLDL NLPPVANDLE LLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-212888162ATERF1
3gcc_A3e-212888162ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.57770.0embryo| root| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0A0S1M61e-119A0A0A0S1M6_PINKR; Ethylene-responsive element binding factor
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.11e-24ERF domain protein 12