PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta010978
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family ERF
Protein Properties Length: 213aa    MW: 23172.1 Da    PI: 9.2257
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S24114709PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.7e-1971121155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                + y+GVr++  +g+Wv+eIr+p++   ++r++lg+f+t+e+Aa+a++ a+  l+g
  Pta010978  71 PPYRGVRRRN-WGKWVSEIREPKK---KTRIWLGSFDTPEMAARAHDVAAFHLKG 121
                57*****877.**********854...6**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.08E-2072130IPR016177DNA-binding domain
PfamPF008479.5E-1372121IPR001471AP2/ERF domain
PROSITE profilePS5103223.22272130IPR001471AP2/ERF domain
SMARTSM003801.7E-3472136IPR001471AP2/ERF domain
PRINTSPR003671.2E-107384IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-3073131IPR001471AP2/ERF domain
CDDcd000182.31E-3073132No hitNo description
PRINTSPR003671.2E-1095111IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MLQRSTSSIF STEVMDNGIA FVPEAMLTSS EYAEATTKSA ATGKGGIKRI RRQQEAALSP  60
PEEAILNQQS PPYRGVRRRN WGKWVSEIRE PKKKTRIWLG SFDTPEMAAR AHDVAAFHLK  120
GKKRSLLNFP ELIDHLPRPI SLSPRDIQAA AAEAAVAFHC GSAENSGRLN DEYKRARGSP  180
IKVSVCNESA VTCSSDGLSA ISSSDIETAS GEV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1573134667ATERF1
3gcc_A1e-1573134667ATERF1
5wx9_A1e-15731301572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.64560.0embryo| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015885179.11e-39dehydration-responsive element-binding protein 3-like
RefseqXP_024930268.11e-39dehydration-responsive element-binding protein 3-like
TrEMBLH9ME149e-67H9ME14_PINRA; Uncharacterized protein (Fragment)
TrEMBLH9XAE89e-67H9XAE8_PINTA; Uncharacterized protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.14e-39ERF family protein