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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Pta010988 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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| Family | bHLH | ||||||||
| Protein Properties | Length: 212aa MW: 24328.5 Da PI: 8.9961 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 40.9 | 3.6e-13 | 80 | 133 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
++ +hn++Er+RR+++N+ + +Lr+llP+++ + +kK+s +i+ +YI +L
Pta010988 80 KKLSHNANERQRRKNLNELYGKLRSLLPNSTFNMKKKVSNPAIVCGILKYIPQL 133
6789*************************66688899**************998 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 13.402 | 79 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 9.80E-9 | 80 | 138 | No hit | No description |
| Pfam | PF00010 | 1.8E-10 | 80 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 7.5E-11 | 80 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 1.28E-13 | 80 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 3.8E-7 | 85 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 212 aa Download sequence Send to blast |
XAQSMAMSAL PRPESFESQL LMEGCEYWRE VEYSKPPCTM LEYGEKFFLS GDNVICNSYL 60 PNITDEKGSG FNLSEEVVTK KLSHNANERQ RRKNLNELYG KLRSLLPNST FNMKKKVSNP 120 AIVCGILKYI PQLRRQIKIL SRQRDELLTL RRTSGQEVKT APAEYHASEM LIDKLDFNQS 180 PKCTFVRSMH FCRETRAASN SSDSTWSSTS LF |
| Expression -- UniGene ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| UniGene ID | E-value | Expressed in | ||||
| Pta.19565 | 0.0 | root | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G56970.1 | 5e-18 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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