PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta011088

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

MYB_related

Protein Properties

Length: 209aa MW: 23501.5 Da PI: 10.4798

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-70782547	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46	1.2e-14	42	86	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + +++G+g+W++I+r + Rt+ q+ s+ qky Pta011088 42 PWTEEEHRQFLMGLRKYGKGDWRSISRNFVVSRTPTQVASHAQKY 86 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.744	35	91	IPR017930	Myb domain
SuperFamily	SSF46689	7.18E-17	36	90	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-17	38	89	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	8.8E-13	39	84	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-12	39	89	IPR001005	SANT/Myb domain
Pfam	PF00249	2.6E-12	42	86	IPR001005	SANT/Myb domain
CDD	cd00167	1.57E-11	42	86	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
FFLFLEWLEK SGAMHGLKQQ FGSGGRGQST KASEQERKKG VPWTEEEHRQ FLMGLRKYGK 60 GDWRSISRNF VVSRTPTQVA SHAQKYYIRL GSDNKNKRRS SIHDITTVHG TDRMPSPLLH 120 VSNRQTNSPS TQAEMNHSPC LTYPSQISRG PLISSLGPQI DGNLLFSPHY PLNLYTQRGF 180 GGLSPRTIIP DSSIAMHHSG YPGQSAMQY

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.13618	0.0	root\| xylem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269\|PubMed:11937495}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010044094.1	1e-49	PREDICTED: transcription factor DIVARICATA
Swissprot	Q8S9H7	3e-45	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A0D6R2Q1	1e-63	A0A0D6R2Q1_ARACU; Uncharacterized protein
STRING	XP_010044094.1	5e-49	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	5e-44	MYB family protein

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]