PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta011107

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

FAR1

Protein Properties

Length: 208aa MW: 23398.7 Da PI: 9.7129

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-24590	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	22.6	3.4e-07	31	109	7	88
FAR1 7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgC..kaklkvkkekdgkwevtkleleHnHe 88 Ak+ G+ ++k + ++ r+g+ t++++vC + g + +++ k +r+ ++ +++C +ak + + + ++w+ + e HnHe Pta011107 31 AKDQGYGIVKLRASNY-RDGKPTRYDLVCDRGGVKYNSTAK----KRNPSTRKIDCpfRAKAVCEVQLGNQWRFAIQEGRHNHE 109 7889999999887776.8899***********9998777....6777777888844466667777789***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-5	31	109	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MPNIPPPALL PPPEGIFRTF EDLMASVQRV AKDQGYGIVK LRASNYRDGK PTRYDLVCDR 60 GGVKYNSTAK KRNPSTRKID CPFRAKAVCE VQLGNQWRFA IQEGRHNHEP RAPSGTPGQE 120 NAPLATSIRS FTNKLDRLNH DMAQGLMRIE QRLDNIEKRM DSLEARAGGG YEPRFQAIEQ 180 RLQGMEGPRM DGMGMDDVET RLLASTVM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A1L7U5Z3	1e-153	A0A1L7U5Z3_FUSMA; Uncharacterized protein
TrEMBL	A0A1L7W4M0	1e-153	A0A1L7W4M0_FUSPR; Uncharacterized protein
TrEMBL	A0A2H3GN48	1e-153	A0A2H3GN48_FUSOX; Uncharacterized protein
TrEMBL	A0A2H3SDV5	1e-153	A0A2H3SDV5_GIBFU; Uncharacterized protein
TrEMBL	A0A2H3TPP3	1e-153	A0A2H3TPP3_FUSOX; Uncharacterized protein
TrEMBL	A0A2K0WMN1	1e-153	A0A2K0WMN1_GIBNY; Uncharacterized protein
TrEMBL	A0A3L6N7C9	1e-153	A0A3L6N7C9_FUSOX; Uncharacterized protein
TrEMBL	F9F398	1e-153	F9F398_FUSOF; Uncharacterized protein
TrEMBL	N1RJS1	1e-153	N1RJS1_FUSC4; Uncharacterized protein
TrEMBL	N4UV10	1e-153	N4UV10_FUSC1; Uncharacterized protein
TrEMBL	S0EID7	1e-153	S0EID7_GIBF5; Uncharacterized protein
TrEMBL	W7N3F5	1e-153	W7N3F5_GIBM7; Uncharacterized protein
TrEMBL	W9HW66	1e-153	W9HW66_9HYPO; Uncharacterized protein
TrEMBL	W9JUH6	1e-153	W9JUH6_FUSOX; Uncharacterized protein
TrEMBL	W9NYA2	1e-153	W9NYA2_FUSOX; Uncharacterized protein
TrEMBL	W9ZNL5	1e-153	W9ZNL5_FUSOX; Uncharacterized protein
TrEMBL	X0C798	1e-153	X0C798_FUSOX; Uncharacterized protein
TrEMBL	X0ICC1	1e-153	X0ICC1_FUSOX; Uncharacterized protein
TrEMBL	X0KA99	1e-153	X0KA99_FUSOX; Uncharacterized protein
TrEMBL	X0LMU4	1e-153	X0LMU4_FUSOX; Uncharacterized protein
STRING	FVEG_10334T0	1e-154	(Fusarium verticillioides)
STRING	CCT73602	1e-154	(Fusarium fujikuroi)
STRING	FOXG_11487P0	1e-154	(Fusarium oxysporum)