PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta011219
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family bHLH
Protein Properties Length: 204aa    MW: 22833.8 Da    PI: 6.795
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-38441PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.28.1e-1067109855
                HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 Er+RR+++N+ + +Lr+++Pk +      K++K +i   A+ Y+ +Lq
  Pta011219  67 TERKRRKKLNDTLYTLRSVVPKiS------KMDKQSIIGDAISYVLDLQ 109
                6*********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.10759108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-1564129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-965114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.5E-1467125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-767109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.63E-968113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MDTRLQYAGE IFKSDYYEDQ NNKQWLDNID EIAGQLDWDD SDPDMMGGSK SAGKINYLQA  60
ASKNLYTERK RRKKLNDTLY TLRSVVPKIS KMDKQSIIGD AISYVLDLQK TIREIESEIE  120
GLRSSSKGAH TQTIPQTVNH LANAELVKRS VESSDTKKSM DKLKHAKVLQ VEICNGGGXG  180
DISCXEIEGK KXTGGLVELT RALX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16774ERKRRKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.64760.0needle| root| shoot| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LRN61e-111B8LRN6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.16e-23bHLH family protein