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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Pta011253 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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| Family | LBD | ||||||||
| Protein Properties | Length: 203aa MW: 22280.5 Da PI: 5.0084 | ||||||||
| Description | LBD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | DUF260 | 69.5 | 7e-22 | 5 | 72 | 29 | 96 |
DUF260 29 kfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96
+f ++hk+FGasn +kll +lp +er d+++s+ yeA+ar++dPvyG+v++il+lq+q+++lk +la
Pta011253 5 HFGAIHKVFGASNFSKLLMHLPIQERYDTVASVSYEAQARLQDPVYGCVSHILALQHQVANLKGKLAF 72
7999**********************************************************998875 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50891 | 12.838 | 1 | 77 | IPR004883 | Lateral organ boundaries, LOB |
| Pfam | PF03195 | 1.9E-20 | 5 | 71 | IPR004883 | Lateral organ boundaries, LOB |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 203 aa Download sequence Send to blast |
MGTPHFGAIH KVFGASNFSK LLMHLPIQER YDTVASVSYE AQARLQDPVY GCVSHILALQ 60 HQVANLKGKL AFGYAQLAAC SSSDGASLIP EYGYGKQSEM PSLMSNSNSS SPSDQQYLNP 120 WGNLQSIPSE SVAANNYDEE AREDEGSWGS FSVCTKGVIQ YARSTAQETD VFREAERFSE 180 QSHPNNYRDG DLQDLASALL RRS |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5ly0_A | 2e-18 | 6 | 77 | 40 | 111 | LOB family transfactor Ramosa2.1 |
| 5ly0_B | 2e-18 | 6 | 77 | 40 | 111 | LOB family transfactor Ramosa2.1 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G00210.1 | 3e-30 | LOB domain-containing protein 31 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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