PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta011263
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family WRKY
Protein Properties Length: 203aa    MW: 22352 Da    PI: 9.8771
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S26636754PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.66e-341774259
               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
               +Dgy+WrKYGqK vk+s++prsYYrCt a+C+vkk+vers edp++v++tYeg+H+h+
  Pta011263 17 EDGYRWRKYGQKAVKNSPYPRSYYRCTNAKCSVKKRVERSFEDPSIVITTYEGQHTHQ 74
               8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.9E-35476IPR003657WRKY domain
SuperFamilySSF1182901.44E-29876IPR003657WRKY domain
PROSITE profilePS5081130.6991176IPR003657WRKY domain
SMARTSM007741.0E-391675IPR003657WRKY domain
PfamPF031066.3E-271774IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
RPGRFAFMTK SDVGHLEDGY RWRKYGQKAV KNSPYPRSYY RCTNAKCSVK KRVERSFEDP  60
SIVITTYEGQ HTHQSPALLR SSGGEGAAAH MAERSSTANS SLPPFTQSSL GFSLQMMAPR  120
TTAAASFDPG HMQQAQAQAQ QQQQQEQETD LQSSQRHMIS AVPPPHPALL QQRSQPQAAA  180
AVPNPTDQGL LEDIVPSGMR KLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-28377478Probable WRKY transcription factor 4
2lex_A6e-28377478Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006841629.12e-49probable WRKY transcription factor 48
SwissprotQ93WV44e-45WRK71_ARATH; WRKY transcription factor 71
TrEMBLA0A0D6QXU11e-60A0A0D6QXU1_ARACU; Uncharacterized protein
STRINGERN033047e-49(Amborella trichopoda)
Publications ? help Back to Top
  1. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  2. Yu Y, et al.
    WRKY71 accelerates flowering via the direct activation of FLOWERING LOCUS T and LEAFY in Arabidopsis thaliana.
    Plant J., 2016. 85(1): p. 96-106
    [PMID:26643131]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Yu Y, et al.
    WRKY71 Acts Antagonistically Against Salt-Delayed Flowering in Arabidopsis thaliana.
    Plant Cell Physiol., 2018. 59(2): p. 414-422
    [PMID:29272465]