PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta011300
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family HSF
Protein Properties Length: 201aa    MW: 22166.7 Da    PI: 6.2348
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S26631412PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.62.3e-34251172103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++sw e+  +fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F+kg+k+ll++ +
     Pta011300  25 FLTKTYQLVDDPATDHIVSWGEDDXTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFRKGEKHLLCENH 112
                   9*****************************************************************99.........******************99 PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
     Pta011300 113 RRKTS 117
                   99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-3816109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.3E-5721114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.9E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.8E-3025113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MTLLLDSCEG MLLSVESHKS VPAPFLTKTY QLVDDPATDH IVSWGEDDXT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF RKGEKHLLCE NHRRKTSSQA  120
VPNSAHGMPM SSSISPTTSD DQDWSPLFTP LSSPRGVAAA AAAAAASVGG GGIGRIVNGW  180
GVPAAEQEEA QRQQCTLAPL L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-232011816123Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.152080.0embryo| root| shoot
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301176.21e-83heat stress transcription factor B-4
SwissprotQ9C6355e-67HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLB9GNU93e-82B9GNU9_POPTR; HSF family protein
STRINGPOPTR_0002s12640.14e-83(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-67heat shock transcription factor B4