PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta011312
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family ZF-HD
Protein Properties Length: 200aa    MW: 21970.5 Da    PI: 7.5585
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-55347PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer64.42.3e-201382260
  ZF-HD_dimer 22 vDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60
                 +DGCgEfmps geegt+++l+CaAC+CHRnFHRreve e
    Pta011312  1 MDGCGEFMPS-GEEGTPESLRCAACECHRNFHRREVEGE 38
                 6********9.999*********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.0E-18135IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152317.156134IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.9E-19135IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-13243IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.603.7E-31101173IPR009057Homeodomain-like
SuperFamilySSF466893.81E-19105171IPR009057Homeodomain-like
TIGRFAMsTIGR015653.5E-26113169IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MDGCGEFMPS GEEGTPESLR CAACECHRNF HRREVEGEEA QTACDVCYHK GLVSGSNLIP  60
LSFPPPAIGV LGRALPQIIA AAPVNNNNMR SSPAFAPSPE SEEQADGNLP SGKKRFRTKF  120
THEQKERMLA FAQRVGWRLQ KHEEAAVQSF CQEVGVKRHV LKVWMHNNKH AMATKPHADN  180
NNHNNDNTAA ANSSSNNSTP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-261141711875ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.162560.0embryo| root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007154109.16e-56hypothetical protein PHAVU_003G091100g
RefseqXP_021684058.17e-56zinc-finger homeodomain protein 4-like
TrEMBLD5ADH85e-55D5ADH8_PICSI; Uncharacterized protein
STRINGPP1S3_539V6.11e-54(Physcomitrella patens)
STRINGXP_007154109.12e-55(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.23e-48homeobox protein 31