PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta011379

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

NF-YC

Protein Properties

Length: 198aa MW: 22267.3 Da PI: 5.0239

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-88082547	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	159.2	6.4e-50	72	166	8	102
NF-YC 8 kqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdelk 102 +++e++++fk+h+lPlarikki+k+dedvkmisaeaPvl+skacelfileltlrswlh+eenkrrtl+++dia a++r d+ dfl+divprde+k Pta011379 72 EEMEQVAEFKQHQLPLARIKKIMKSDEDVKMISAEAPVLFSKACELFILELTLRSWLHTEENKRRTLQRNDIAGAISRGDVLDFLLDIVPRDEVK 166 68******************************************************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	8.89E-30	72	156	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	8.8E-37	75	147	IPR009072	Histone-fold
Pfam	PF00808	5.1E-21	84	147	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MEGNYPHLQS SATPPVSHGP SSLMHNSLFQ QQQPQMPLQH HQQQLQGVNA ASSPLHADPE 60 TAAADVLATA DEEMEQVAEF KQHQLPLARI KKIMKSDEDV KMISAEAPVL FSKACELFIL 120 ELTLRSWLHT EENKRRTLQR NDIAGAISRG DVLDFLLDIV PRDEVKDVMA AQQTMSQQLM 180 SQQPLMPDQP LMYQPPQQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	4e-49	72	162	5	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	140	RRTLQRN

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.11563	0.0	root\| xylem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A9NUT0	8e-86	A9NUT0_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	2e-55	nuclear factor Y, subunit C1