PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta011473

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

bHLH

Protein Properties

Length: 194aa MW: 21601.5 Da PI: 6.7969

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-6666	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.5	3.7e-11	143	189	1	50
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveY 50 +r +h e+Er+RR+++N ++ Lr+l+P++ + ++ a+i A++ Pta011473 143 QRITHIEVERNRRKQMNAHLDVLRSLIPQS---YIQRGXXASIIGGAIDL 189 799**************************9...88888888888888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.41E-11	135	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.02E-9	142	193	No hit	No description
PROSITE profile	PS50888	13.776	142	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-9	142	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.8E-8	143	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MEIMEEMIEI PRLNDNIGLN IPWLHGGLFR KRLTSSPLHN EPAGKQANMM PNMENCFTRL 60 VQGFEPGESC VTALSDLKPG GNNIDTFNAV QSHSETAEDG ISDTTHDDQQ NAISMAVPAA 120 DAGKGRKRKR QKVSKNSEEV LSQRITHIEV ERNRRKQMNA HLDVLRSLIP QSYIQRGXXA 180 SIIGGAIDLX KELX

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.6011	0.0	xylem

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24140.1	8e-19	bHLH family protein