PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta011497
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family ERF
Protein Properties Length: 193aa    MW: 21216.7 Da    PI: 8.4412
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-74155PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.9e-1968118155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                + y+GVr++  +g+Wv+eIr+p   + r +r +lg+f+ta+eAa a++ a+++l+g
  Pta011497  68 CNYRGVRQRT-WGKWVSEIREP---N-RgARLWLGTFDTAQEAALAYDDAARALYG 118
                56*****999.**********8...3.35***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.7E-1368118IPR001471AP2/ERF domain
CDDcd000183.30E-3368128No hitNo description
SMARTSM003802.9E-3469132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-3169128IPR001471AP2/ERF domain
PROSITE profilePS5103222.08969126IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-2169128IPR016177DNA-binding domain
PRINTSPR003674.3E-117081IPR001471AP2/ERF domain
PRINTSPR003674.3E-1192108IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
TRGFLDSLEI ISHIYLYILL YVGQIDTNAD PDIMAINGNG APLKQIRKTR GSKKGCMKGK  60
GGPENALCNY RGVRQRTWGK WVSEIREPNR GARLWLGTFD TAQEAALAYD DAARALYGSD  120
ANLNLPDSIK KPTGFQTQSA CNNNIQSDGY VNTIPDAKDK EVSLSVADEI KVDDIPPLIN  180
VSSSTWPGRP LRX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-1969126260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009106200.13e-44PREDICTED: dehydration-responsive element-binding protein 2D
SwissprotQ9LQZ26e-44DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLM4DH636e-43M4DH63_BRARP; Uncharacterized protein
STRINGBra015840.1-P1e-43(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.12e-26ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]