PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta011520
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MIKC_MADS
Protein Properties Length: 192aa    MW: 21751.5 Da    PI: 9.7407
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-8146PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.76.2e-23959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               k i+n s+rqvtfskR+ng+lK  +ELSvLCdae  +iifs+tgk  e++s
  Pta011520  9 KHIQNPSRRQVTFSKRKNGLLKXXFELSVLCDAEXXLIIFSETGKXSEFAS 59
               689**********************************************86 PP
2K-box49.22.2e-17941611885
      K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                + +l+ L+++++nL+++ R+++Ged +sLs keL++Le+qL  ++k+i +kK++++ ++ + l +k +
  Pta011520  94 ESQLKALQERMDNLKKKERNMVGEDSQSLSGKELHRLENQLRIAIKRISDKKMKIFAQNAKSLAQKLR 161
                567899*****************************************************999999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.4E-27160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.927161IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.37E-26278IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-22323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-191157IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-222338IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-223859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.60690180IPR002487Transcription factor, K-box
PfamPF014862.7E-1395162IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MGKTKMEMKH IQNPSRRQVT FSKRKNGLLK XXFELSVLCD AEXXLIIFSE TGKXSEFASH  60
NDMATILEKY RIYTETETDG NMGASSVQSV KVGESQLKAL QERMDNLKKK ERNMVGEDSQ  120
SLSGKELHRL ENQLRIAIKR ISDKKMKIFA QNAKSLAQKL RTRDDSFSST NLNLGGFCDG  180
NINGDCFSSE IH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-16175174MEF2C
5f28_B1e-16175174MEF2C
5f28_C1e-16175174MEF2C
5f28_D1e-16175174MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.135660.0root| shoot| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K0M7C91e-117A0A0K0M7C9_PINTB; MADS6 (Fragment)