PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta011530

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

WOX

Protein Properties

Length: 192aa MW: 21387.7 Da PI: 10.0989

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S26638435	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	53.4	4.3e-17	27	87	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Le+ F++ p +ee +++ + l ++ e+ V++WFqNr+ k k+ Pta011530 27 KPRWNPKPEQIRILENIFNSgMVSPPREELKRIRTLLeefgQVGEASVFYWFQNRKSKTKR 87 89***************99************************************97 PP
2	Wus_type_Homeobox	100.1	1.7e-32	26	89	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+P+peQi+iLe++++sG+++P++ee++ri++ Lee+G+++++ VfyWFQNrk++ +++q Pta011530 26 SKPRWNPKPEQIRILENIFNSGMVSPPREELKRIRTLLEEFGQVGEASVFYWFQNRKSKTKRRQ 89 689**********************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-7	12	88	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.72E-13	23	93	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.094	23	88	IPR001356	Homeobox domain
SMART	SM00389	1.2E-6	25	92	IPR001356	Homeobox domain
Pfam	PF00046	9.6E-15	27	87	IPR001356	Homeobox domain
CDD	cd00086	2.64E-6	27	89	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MGPPYSEGDV SSPNYEREKE RSPPKSKPRW NPKPEQIRIL ENIFNSGMVS PPREELKRIR 60 TLLEEFGQVG EASVFYWFQN RKSKTKRRQH QLQAAQQSKS VAETGTLSSS SSTSTTTTSS 120 SVQSKPVTGL ASSPVNSMHN KIENQLLSSS AMPVSSFAGH QYYMQVNEEL STNQYSNVQA 180 IRAAATAETQ KN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	79	86	NRKSKTKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024982924.1	5e-33	WUSCHEL-related homeobox 9
TrEMBL	R9R8B6	7e-50	R9R8B6_PICAB; WUSCHEL homeobox protein WOX8C
STRING	Aquca_036_00007.1	2e-32	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	4e-33	homeobox-3