PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta011531

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

NF-YB

Protein Properties

Length: 191aa MW: 21114.9 Da PI: 7.196

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-104382551	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	175.2	6.6e-55	34	129	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 reqdr+lPianv+rimkk+lP+nakisk+ake++qecvsefisfvt+easdkc++ekrktingdd+lwa++tlGfe y+eplkvyl kyrelegek Pta011531 34 REQDRLLPIANVGRIMKKTLPTNAKISKEAKEIMQECVSEFISFVTGEASDKCHKEKRKTINGDDILWAMTTLGFEVYAEPLKVYLDKYRELEGEK 129 89*******************************************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.3E-53	29	137	IPR009072	Histone-fold
SuperFamily	SSF47113	1.27E-40	36	137	IPR009072	Histone-fold
Pfam	PF00808	6.3E-28	39	103	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.0E-21	67	85	No hit	No description
PROSITE pattern	PS00685	0	70	86	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	2.0E-21	86	104	No hit	No description
PRINTS	PR00615	2.0E-21	105	123	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MGDHSGGESS PHSDIESTGI HNNGSSSSSQ SIIREQDRLL PIANVGRIMK KTLPTNAKIS 60 KEAKEIMQEC VSEFISFVTG EASDKCHKEK RKTINGDDIL WAMTTLGFEV YAEPLKVYLD 120 KYRELEGEKL SMSKQLQVDQ PQPDLQYQAC NPSAHNRPLV MTYKMPLPMA MHGRGPSGAD 180 PAATGHGRRP F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	4e-48	33	124	1	92	Transcription factor HapC (Eurofung)
4g92_B	4e-48	33	124	1	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.15621	0.0	root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269\|PubMed:11250072}.

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024396797.1	9e-62	nuclear transcription factor Y subunit B-3-like
Refseq	XP_024396798.1	9e-62	nuclear transcription factor Y subunit B-3-like
Swissprot	O23310	2e-57	NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBL	H9MDE7	2e-69	H9MDE7_PINRA; Uncharacterized protein (Fragment)
TrEMBL	H9VDK5	2e-69	H9VDK5_PINTA; Uncharacterized protein (Fragment)
STRING	PP1S83_179V6.2	3e-61	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	3e-58	nuclear factor Y, subunit B3

Publications ? help Back to Top
Han X, et al. Overexpression of the poplar NF-YB7 transcription factor confers drought tolerance and improves water-use efficiency in Arabidopsis. J. Exp. Bot., 2013. 64(14): p. 4589-601 [PMID:24006421] Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Hossain MA, et al. Identification of Novel Components of the Unfolded Protein Response in Arabidopsis. Front Plant Sci, 2016. 7: p. 650 [PMID:27242851] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]