PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta011570

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

SBP

Protein Properties

Length: 190aa MW: 21621.4 Da PI: 9.9975

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-38181	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	133.8	5.5e-42	67	143	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqve+C+adl++akey+rrh+vCe+hska vlv gl+qrfCqqCsrfh l+efDe+krsCrrrLa+hnerrrk+ Pta011570 67 ACQVEKCAADLADAKEYYRRHRVCEQHSKARIVLVLGLQQRFCQQCSRFHVLEEFDEAKRSCRRRLAGHNERRRKTP 143 5*************************************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	9.2E-35	60	129	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.949	65	142	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	8.11E-39	66	145	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	7.4E-32	68	141	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MDEVQVKVDI QSTNVSADEP RPAKRQGFEL AKSPENVASK STALSSPKKP KAASSSSSSS 60 PRAQPPACQV EKCAADLADA KEYYRRHRVC EQHSKARIVL VLGLQQRFCQ QCSRFHVLEE 120 FDEAKRSCRR RLAGHNERRR KTPSDSSVDR LDSNHHLNDN WLRHMKETDK MSIVLERNTT 180 AKVCKEIKNH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-35	54	141	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.8734	0.0	root\| xylem

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021682433.1	5e-43	squamosa promoter-binding protein 1-like
Swissprot	Q38741	2e-38	SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBL	A9NSA8	1e-113	A9NSA8_PICSI; Uncharacterized protein
STRING	GSMUA_Achr4P23650_001	7e-42	(Musa acuminata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53160.2	6e-39	squamosa promoter binding protein-like 4

Publications ? help Back to Top
Klein J,Saedler H,Huijser P A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet., 1996. 250(1): p. 7-16 [PMID:8569690]