PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta011589
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family C2H2
Protein Properties Length: 190aa    MW: 21500 Da    PI: 8.0052
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S26640752PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-05125143321
                ETTTTEEESSHHHHHHHHH CS
    zf-C2H2   3 CpdCgksFsrksnLkrHir 21 
                C++Cg+ F ++ +L rH+r
  Pta011589 125 CEYCGEEFFSWKTLIRHMR 143
                ******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.88E-91234No hitNo description
SMARTSM003550.351234IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-41235IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.7E-51234IPR007087Zinc finger, C2H2
PROSITE profilePS501579.0781239IPR007087Zinc finger, C2H2
PROSITE patternPS0002801434IPR007087Zinc finger, C2H2
SuperFamilySSF576671.88E-9118145No hitNo description
SMARTSM003550.019123145IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.764123150IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.0E-4125146IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139120.029125146IPR007087Zinc finger, C2H2
PROSITE patternPS000280125145IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MEEQECVQSF KHVCKVCKRR FACGRALGGH MRIHGSTVAA ASDFNEGSSE TGAKPALVPG  60
PVKQEQEASC GVDLQQQLTN GPVYDLRPKR KRNWSYADLE HSFDMPYEFG SKMLPSTSLK  120
NLQLCEYCGE EFFSWKTLIR HMRCHYNNST EGEEYGVSEG KEDVSNSESD SDSNPQRNKT  180
KGKRSKRPRH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.15e-10C2H2-like zinc finger protein