PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta011694
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family HD-ZIP
Protein Properties Length: 185aa    MW: 21499.4 Da    PI: 8.7682
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-138982547PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox51.22.1e-163792256
               T--SS--HHHHHHHHHHHHHSSS--HH.HHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox  2 rkRttftkeqleeLeelFeknrypsae.ereeLAkklgLterqVkvWFqNrRakek 56
               rk+ +++keq   Lee F+++++++ + ++  LAk+l+L  rqV vWFqNrRa+ k
  Pta011694 37 RKKLRLSKEQSALLEESFREHSTLNPQkQKNALAKQLNLRPRQVEVWFQNRRARTK 92
               778899******************97526889**********************98 PP
2HD-ZIP_I/II121.73.8e-3937128192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLep.erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  +kk+rlskeq++lLEesF+e+++L+p ++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
    Pta011694  37 RKKLRLSKEQSALLEESFREHSTLNPqKQKNALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKELQELR-ALK 128
                  69***********************945799*********************************************************9.565 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.9853394IPR001356Homeobox domain
SMARTSM003892.1E-113598IPR001356Homeobox domain
SuperFamilySSF466897.27E-1636102IPR009057Homeodomain-like
PfamPF000469.9E-143792IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.6E-163792IPR009057Homeodomain-like
CDDcd000869.88E-123795No hitNo description
PROSITE patternPS0002706992IPR017970Homeobox, conserved site
SMARTSM003405.3E-2294137IPR003106Leucine zipper, homeobox-associated
PfamPF021836.4E-1294128IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MAVKRERERA FDLEAERDRT CDVSSRTSDE EEIGSTRKKL RLSKEQSALL EESFREHSTL  60
NPQKQKNALA KQLNLRPRQV EVWFQNRRAR TKLKQTEVDC EVLKRCCENL TEENRRLQKE  120
LQELRALKAA PQPCVIGQDN YYMPLPATTL TMCPSCERVA TMENSRSLQF SKSQISQFTQ  180
QSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13541TRKKLRL
28694RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.128340.0root| shoot| xylem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
UniprotTISSUE SPECIFICITY: Expressed in stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388907.14e-89homeobox-leucine zipper protein HAT4-like
SwissprotA2YW037e-67HOX27_ORYSI; Homeobox-leucine zipper protein HOX27
SwissprotA2Z1U14e-67HOX11_ORYSI; Homeobox-leucine zipper protein HOX11
SwissprotP466655e-67HAT14_ARATH; Homeobox-leucine zipper protein HAT14
SwissprotQ6YPD07e-67HOX27_ORYSJ; Homeobox-leucine zipper protein HOX27
TrEMBLA9NX561e-124A9NX56_PICSI; Uncharacterized protein
STRINGPP1S31_269V6.12e-88(Physcomitrella patens)