PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta011747
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family M-type_MADS
Protein Properties Length: 184aa    MW: 21758.9 Da    PI: 8.9125
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S26635133PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.12.7e-141857443
               -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
     SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                 ++ r+ tf kR++g+ KK eELS+LC++e +++ f+++
  Pta011747 18 PRDTSRNMTFMKRKKGLKKKVEELSILCGVESCMVCFGPQ 57
               56789********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.3E-13766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.703755IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.23E-218108IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-8929IPR002100Transcription factor, MADS-box
PfamPF003193.5E-151957IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-82944IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MDAWKQMGRA KIPIKWIPRD TSRNMTFMKR KKGLKKKVEE LSILCGVESC MVCFGPQMDQ  60
QTASEHPDVW PGKSKALEIV ERYRSLSKEE QEKKKLDNSS FLEQRIKKLK VELSIKRKEN  120
RELEMEAVYP WDTCLNFFTD EQLRDLVDYI DIRLETVHDR INFLTRHERK ISNGAIVESD  180
MVSX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5AE401e-107D5AE40_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-19AGAMOUS-like 80