PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta011784

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

TCP

Protein Properties

Length: 182aa MW: 19857.4 Da PI: 9.811

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-34821	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	112	8.4e-35	31	113	3	82
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa...sec.eaesssssa 82 +k+++++++hTkv+gR+RRvR++a aar+F+L++eLG+++d++ti+WLl++a+pai ++tgt++ +a s ++ss+ s+ Pta011784 31 AKRSSTKDRHTKVNGRGRRVRIPAASAARIFQLTRELGHKSDGETIQWLLNKAEPAIMAATGTGTVPAlpmS-IiGPVSSNPSK 113 6999***********************************************************888874431.13222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.8E-29	35	116	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	25.871	36	90	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MSSEEVPNQA EQRIVLADPQ SNDPARKALV AKRSSTKDRH TKVNGRGRRV RIPAASAARI 60 FQLTRELGHK SDGETIQWLL NKAEPAIMAA TGTGTVPALP MSIIGPVSSN PSKLQQHPQT 120 PASVHSILAL PPFGPSAGMD FEFQGGQLSH RPFTSMLWGS EDQALDDHRI DHSLKQNNLH 180 CY

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.21725	0.0	shoot

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003541424.1	3e-43	transcription factor TCP11
Refseq	XP_028196567.1	3e-43	transcription factor TCP11-like
TrEMBL	H9MA79	1e-57	H9MA79_PINRA; Uncharacterized protein (Fragment)
TrEMBL	H9W0S8	1e-57	H9W0S8_PINTA; Uncharacterized protein (Fragment)
STRING	GLYMA13G20710.2	1e-42	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	3e-38	TCP family protein