PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta011953
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family WRKY
Protein Properties Length: 175aa    MW: 18687.5 Da    PI: 8.827
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-11111PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.81.7e-26353959
               EEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY  9 KYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                YGqK+vkg+++prsYY+Ct  gCpv+k+ver+++d k+v++tYeg+Hnh+
  Pta011953  3 QYGQKVVKGNPHPRSYYKCTNLGCPVRKHVERASTDAKAVITTYEGKHNHD 53
               5*************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081130.538155IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-25355IPR003657WRKY domain
PfamPF031064.3E-20353IPR003657WRKY domain
SuperFamilySSF1182901.7E-21355IPR003657WRKY domain
SMARTSM007743.1E-25454IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
XAQYGQKVVK GNPHPRSYYK CTNLGCPVRK HVERASTDAK AVITTYEGKH NHDVPAARHS  60
SHDVAGAVSQ VQTVNHSVGA NVLMSQQMGN KQSAFSRISE STPEGRNDAN KESGEPVLAI  120
CDKSHSENMK TTAPVSTSVP LLTYTNTGGS FGGGVNVPLS ETVQVLGTIR PKEEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-283562578Probable WRKY transcription factor 4
2lex_A7e-283562578Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.171310.0root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6QV759e-69A0A0D6QV75_ARACU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.13e-31WRKY DNA-binding protein 33