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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Pta011959 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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| Family | ZF-HD | ||||||||
| Protein Properties | Length: 175aa MW: 19665.9 Da PI: 7.5991 | ||||||||
| Description | ZF-HD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | ZF-HD_dimer | 105.2 | 3.9e-33 | 109 | 165 | 3 | 60 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60
+vrY+eC+kNhAas+Gg+avDGCgEfmps geegta alkCaAC+CHRnFHRre e e
Pta011959 109 AVRYRECRKNHAASIGGYAVDGCGEFMPS-GEEGTAGALKCAACNCHRNFHRREAEGE 165
79**************************9.999*********************9875 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| ProDom | PD125774 | 2.0E-24 | 103 | 170 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| Pfam | PF04770 | 4.5E-31 | 110 | 162 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| TIGRFAMs | TIGR01566 | 1.3E-29 | 111 | 161 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| PROSITE profile | PS51523 | 27.19 | 112 | 161 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 175 aa Download sequence Send to blast |
MDLGMNREVQ VSIPMPSNYH QTIQESSRLQ QIYGKSLGIV EGMSPPEDLR SQVQGMRPPH 60 HVHETTAAAT RPGPPPPPVH EDMRTQQHQQ PQHYPQENNR NADNILIKAV RYRECRKNHA 120 ASIGGYAVDG CGEFMPSGEE GTAGALKCAA CNCHRNFHRR EAEGENRCDC HHTRR |
| Expression -- UniGene ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| UniGene ID | E-value | Expressed in | ||||
| Pta.6996 | 0.0 | root| shoot| xylem | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| TrEMBL | B8LM89 | 1e-105 | B8LM89_PICSI; Uncharacterized protein | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G28917.1 | 1e-28 | mini zinc finger 2 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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