PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta011968

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

HD-ZIP

Protein Properties

Length: 175aa MW: 20075.2 Da PI: 5.9536

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-74017	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.4	2.4e-18	2	48	10	56
HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 eq+++Le+ Fe+ + p a ++eeLA lgL+ +q+ +WFqNrRak+k Pta011968 2 EQTRALENSFESGKIPEAGRKEELAGALGLQPTQIAIWFQNRRAKWK 48 8*********************************************9 PP
2	HD-ZIP_I/II	96.3	3e-31	2	86	9	93
HD-ZIP_I/II 9 eqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 eq ++LE+sFe+ + e rK+ela +Lglqp q+a+WFqnrRA++kt qlEkdy++L ++y +lk++ ++L +e+++Lr+e+++ Pta011968 2 EQTRALENSFESGKIPEAGRKEELAGALGLQPTQIAIWFQNRRAKWKTAQLEKDYRSLNQNYGSLKAQYHTLLEENKKLRSEIQR 86 9********************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	8.9E-10	1	54	IPR001356	Homeobox domain
PROSITE profile	PS50071	16.196	1	50	IPR001356	Homeobox domain
CDD	cd00086	1.24E-13	1	48	No hit	No description
SuperFamily	SSF46689	4.28E-17	2	62	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.5E-19	2	57	IPR009057	Homeodomain-like
Pfam	PF00046	1.4E-15	2	48	IPR001356	Homeobox domain
PRINTS	PR00031	1.2E-6	21	30	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	25	48	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.2E-6	30	46	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.0E-11	51	86	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MEQTRALENS FESGKIPEAG RKEELAGALG LQPTQIAIWF QNRRAKWKTA QLEKDYRSLN 60 QNYGSLKAQY HTLLEENKKL RSEIQRSGSI SKNGQSRHDK EVMGDGQTDF NAVQEKKVEC 120 YSFHNTEDNI RHQVCIEENC GHNALVAIEE EDCYRNMGGV SSFMFEDHWT PGFQG

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.1896	0.0	root\| shoot

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15150.1	4e-28	homeobox 3