PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta012021

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

LBD

Protein Properties

Length: 172aa MW: 19208 Da PI: 9.5573

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-24088	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121.4	5e-38	18	117	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+Ca++ ++apyf +p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA+ar+rdPvyG++g+i +lq+q + l++el+++k+e Pta012021 18 PCAACKLLRRRCAQERPFAPYFSPLEPQKFASVHKVFGASNVSKMLMEVPENQRADAANSLVYEANARLRDPVYGSTGTIYSLQHQAQVLRVELNAMKAE 117 7**********************************************************************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.716	17	118	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.2E-38	18	115	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MTHRPTVGSP AALNTITPCA ACKLLRRRCA QERPFAPYFS PLEPQKFASV HKVFGASNVS 60 KMLMEVPENQ RADAANSLVY EANARLRDPV YGSTGTIYSL QHQAQVLRVE LNAMKAEILK 120 YKCRDPMSQP PMLGVYNVNS DDCKVNNPTG STVNAADYTV KQRYYSIINH NR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-41	9	135	2	128	LOB family transfactor Ramosa2.1
5ly0_B	2e-41	9	135	2	128	LOB family transfactor Ramosa2.1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.15372	1e-179	root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022746093.1	6e-67	LOB domain-containing protein 15-like
Swissprot	Q8L5T5	2e-58	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A061FRT3	2e-65	A0A061FRT3_THECC; LOB domain-containing protein 15
TrEMBL	A0A0D2QQ34	2e-65	A0A0D2QQ34_GOSRA; Uncharacterized protein
TrEMBL	A0A1R3KW59	2e-65	A0A1R3KW59_9ROSI; Uncharacterized protein
STRING	EOY20040	3e-66	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	7e-61	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]