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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Pta012241 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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| Family | LBD | ||||||||
| Protein Properties | Length: 162aa MW: 17418.3 Da PI: 5.1426 | ||||||||
| Description | LBD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | DUF260 | 49.8 | 1e-15 | 3 | 51 | 53 | 101 |
DUF260 53 eredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101
er +a+ ++ yeA+ar++dPvyG+v++i++lqqq+++l+aela ++++l
Pta012241 3 ERCEAVVTISYEAQARLQDPVYGCVAHIFALQQQVASLQAELAIVQAQL 51
6899****************************************99985 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50891 | 9.344 | 1 | 51 | IPR004883 | Lateral organ boundaries, LOB |
| Pfam | PF03195 | 6.3E-13 | 3 | 48 | IPR004883 | Lateral organ boundaries, LOB |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 162 aa Download sequence Send to blast |
MPERCEAVVT ISYEAQARLQ DPVYGCVAHI FALQQQVASL QAELAIVQAQ LASRMASGSA 60 STSANYPTIS SSSYSEHPHQ FPAHLSLPCQ PAPQPYYALL SRAKKENSSG FASDMDYEFS 120 GSPSDNSSPQ MEVLQRCRNV EENGGGDGGE LQALAHALLR RG |
| Expression -- UniGene ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| UniGene ID | E-value | Expressed in | ||||
| Pta.15109 | 0.0 | root | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_024370367.1 | 6e-24 | uncharacterized protein LOC112279864 | ||||
| TrEMBL | D5A9D3 | 5e-77 | D5A9D3_PICSI; Uncharacterized protein | ||||
| STRING | PP1S157_25V6.1 | 1e-23 | (Physcomitrella patens) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G58190.1 | 2e-24 | lateral organ boundaries-domain 29 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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