PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta012462
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family bZIP
Protein Properties Length: 152aa    MW: 17261.2 Da    PI: 10.1839
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S26635481PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1452.4e-1461118562
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                +++rr+ +NRe+ArrsR RK++ ++eL+  + +L aeN    ++ +  ++++ + +s+
  Pta012462  61 RKQRRMLSNRESARRSRMRKQQHLDELRAQIVQLRAENNHILSKFNLTSQHYLQWRSK 118
                79******************************************99999999887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.5E-1357121IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.51959104IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1709.7E-1261117No hitNo description
SuperFamilySSF579592.95E-1261117No hitNo description
PfamPF001701.5E-1061117IPR004827Basic-leucine zipper domain
CDDcd147025.36E-2062112No hitNo description
PROSITE patternPS0003606479IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MAPPPSTKLN LPPCTTNSTG SSSSMTYGSC PPSSSHSGSE EEEQQRQGQQ KEKKKNVIDE  60
RKQRRMLSNR ESARRSRMRK QQHLDELRAQ IVQLRAENNH ILSKFNLTSQ HYLQWRSKIV  120
FSDLKPLICI RSFSCDLHAA AAASLGNFDD LX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17380RRSRMRKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm and radicle tip in early germinating seeds. {ECO:0000269|PubMed:23461773}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotC0Z2L51e-19BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A0C9S8793e-34A0A0C9S879_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_5460_974 transcribed RNA sequence
TrEMBLA0A0C9SA042e-34A0A0C9SA04_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_5459_968 transcribed RNA sequence
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04038.12e-21basic leucine-zipper 48
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]