PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta012529
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family C2H2
Protein Properties Length: 149aa    MW: 16705.8 Da    PI: 6.9391
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S25797118PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.9e-051537123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y C++C+k F +   L  H+r+H
  Pta012529 15 YMCKICSKGFVSGRALGGHMRVH 37
               89*******************99 PP
2zf-C2H216.13.2e-05121139321
                ETTTTEEESSHHHHHHHHH CS
    zf-C2H2   3 CpdCgksFsrksnLkrHir 21 
                C  Cgk Fs+++ L  H++
  Pta012529 121 CDVCGKGFSSWEGLFGHMS 139
                *****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.2E-51537IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.7E-71537IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.5751542IPR007087Zinc finger, C2H2
SuperFamilySSF576673.53E-91537No hitNo description
SMARTSM003550.0161537IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801737IPR007087Zinc finger, C2H2
SuperFamilySSF576673.53E-9114141No hitNo description
SMARTSM003550.022119141IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349119146IPR007087Zinc finger, C2H2
PfamPF139121.2E-6120143IPR007087Zinc finger, C2H2
PROSITE patternPS000280121141IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MDVFKKQGAE HPLNYMCKIC SKGFVSGRAL GGHMRVHAPA SIAADTHTET EFQKSKGSGA  60
WDHKLMQEKE KDEEGLDSNG SNLMYDLRRN PKHSWRFEDQ DYSGLLGQRF DPKPIDSSIN  120
CDVCGKGFSS WEGLFGHMSC HSEPIKIVV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9RQJ14e-33A0A0C9RQJ1_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_25048_2114 transcribed RNA sequence