PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta012694
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MYB_related
Protein Properties Length: 140aa    MW: 15812.1 Da    PI: 4.3236
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S25795487PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.62.5e-077431044
                     HHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding 10 ellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     + + +a + +G++   +W+ +++++g g++++++k ++
        Pta012694  7 QDFENALAIYGKDtpdRWHNVSSMVG-GKSPEEVKRHY 43
                     6799**********************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001671.21E-6647No hitNo description
PfamPF002491.2E-5643IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-4749IPR009057Homeodomain-like
SuperFamilySSF466891.63E-8752IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MECRGEQDFE NALAIYGKDT PDRWHNVSSM VGGKSPEEVK RHYEILLEDL SCIEAGKVSI  60
PNYLFDIATD DEVPVHHKNA GGEGQVTVPG SSNNIVWTDE EXKGFKALED TVKMNQHFID  120
MAFFYLFFIY VPDVPSSNNX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-219631973RADIALIS