PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta012778
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family NAC
Protein Properties Length: 133aa    MW: 15284.2 Da    PI: 6.099
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-35140PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM28.15.7e-0955125166
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdk 66 
                lp G++F+P+de+lv ++L++kv   k      ++++   ++e  +i+++ P++Lp  vk++  + + F ++dk
  Pta012778  55 LPSGVKFEPSDEQLV-RHLAAKVGIGKssphplINEFILtLEERdGICYTYPENLP-GVKQD-WKQHPFLSQDK 125
                699************.899999987776777664444444777756**********.44343.33455555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-1040116IPR003441NAC domain
PROSITE profilePS5100510.50455133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MARPWITDGR RIAMKIRNPT QLLENENGRN DVRIACPNCD YEIDNSHVTQ EWPGLPSGVK  60
FEPSDEQLVR HLAAKVGIGK SSPHPLINEF ILTLEERDGI CYTYPENLPG VKQDWKQHPF  120
LSQDKQGLYN WNS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.130270.0root| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002272446.16e-41PREDICTED: NAC domain-containing protein 8 isoform X2
RefseqXP_022867495.13e-43SUPPRESSOR OF GAMMA RESPONSE 1-like
TrEMBLA0A3G6J9P73e-74A0A3G6J9P7_PINTA; NAC domain-containing protein 8
STRINGVIT_14s0066g00360.t014e-39(Vitis vinifera)
STRINGGSMUA_Achr3P07330_0017e-40(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.18e-37NAC domain containing protein 44