PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta012840
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family bHLH
Protein Properties Length: 128aa    MW: 14616.4 Da    PI: 8.778
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-15566PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-1256101655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +++Er RR ri +++ +L+el+P+      k  + a++L +AveY+k Lq
  Pta012840  56 SIAERVRRTRISDRIRKLQELVPNM----EKQTNTADMLNEAVEYVKLLQ 101
                689*********************7....467***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.30350100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-1653115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.34E-954105No hitNo description
Gene3DG3DSA:4.10.280.101.4E-1655113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-1056101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-1056106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
XKIEGETRRH AASALANHHF GLFESTSSEI ALEKILEESV PCRIRAKRGC ATHPRSIAER  60
VRRTRISDRI RKLQELVPNM EKQTNTADML NEAVEYVKLL QKKVQELSEK QCKCDCASRE  120
HADVDNKA
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002271390.13e-49PREDICTED: transcription factor bHLH80 isoform X2
SwissprotQ9C8P82e-46BH080_ARATH; Transcription factor bHLH80
TrEMBLF6I3Y88e-48F6I3Y8_VITVI; Uncharacterized protein
STRINGVIT_18s0041g00690.t011e-48(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.14e-38bHLH family protein