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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Pta012867 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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| Family | LBD | ||||||||
| Protein Properties | Length: 126aa MW: 13996 Da PI: 6.0776 | ||||||||
| Description | LBD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | DUF260 | 80.8 | 2.2e-25 | 3 | 93 | 9 | 99 |
DUF260 9 rrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99
+++C ++ ++ f +++ +kfa++h++FGa nv+kl+++lp+++r da++s+vyeA ar++dP G++g+i++lq+q++ l+ +++++++
Pta012867 3 QKECLANSTMLYRFLSNDLHKFAILHQVFGACNVIKLIRDLPPDQRIDAINSMVYEASARLQDPALGCTGIIQQLQRQISALECQISTTQA 93
789*999999999************************************************************************998875 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50891 | 17.002 | 1 | 95 | IPR004883 | Lateral organ boundaries, LOB |
| PROSITE profile | PS51257 | 5 | 1 | 34 | No hit | No description |
| Pfam | PF03195 | 3.4E-24 | 3 | 92 | IPR004883 | Lateral organ boundaries, LOB |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 126 aa Download sequence Send to blast |
MEQKECLANS TMLYRFLSND LHKFAILHQV FGACNVIKLI RDLPPDQRID AINSMVYEAS 60 ARLQDPALGC TGIIQQLQRQ ISALECQIST TQAIIQKIRS QQEQLLASIP GFGTAGEEDT 120 TSIGHH |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5ly0_A | 2e-22 | 3 | 85 | 19 | 101 | LOB family transfactor Ramosa2.1 |
| 5ly0_B | 2e-22 | 3 | 85 | 19 | 101 | LOB family transfactor Ramosa2.1 |
| Search in ModeBase | ||||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| TrEMBL | A9P1U3 | 2e-56 | A9P1U3_PICSI; Uncharacterized protein | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G30130.1 | 7e-29 | LBD family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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