PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta012892

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

HB-other

Protein Properties

Length: 124aa MW: 14407.3 Da PI: 9.4392

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-16742	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60	3.8e-19	9	64	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR+ t++q+e+Le+ +++++yp+++++++L+++lgL+e+qV+ WF rR k+kk Pta012892 9 QKRRLKTPSQVEALENIYAEHKYPTESMKAKLSRELGLSEKQVQRWFRHRRLKDKK 64 589999************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.277	5	65	IPR001356	Homeobox domain
SMART	SM00389	1.4E-17	8	69	IPR001356	Homeobox domain
CDD	cd00086	7.79E-17	9	66	No hit	No description
Pfam	PF00046	1.3E-16	9	64	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.67E-18	9	71	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-19	10	73	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 124 aa Download sequence Send to blast
MEDKGFVEQK RRLKTPSQVE ALENIYAEHK YPTESMKAKL SRELGLSEKQ VQRWFRHRRL 60 KDKKGKKEEP DSNEELDAGS GSNLQQQQHL VRTEMGRSEK KRLLGISDYP SAVLAAELND 120 HDML

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269\|PubMed:22694359}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010276612.1	4e-22	PREDICTED: uncharacterized protein LOC104611309
Swissprot	F4HY56	4e-17	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	D5ABF4	2e-78	D5ABF4_PICSI; Uncharacterized protein
STRING	GLYMA04G15260.1	1e-21	(Glycine max)
STRING	XP_010276612.1	1e-21	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	6e-23	HB-other family protein