PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta012966
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family WRKY
Protein Properties Length: 117aa    MW: 12419.4 Da    PI: 9.6921
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-37933PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY28.52.9e-093283459
               -EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY 34 vkkkversaedpkvveitYegeHnhe 59
               v+k+ver+++d k+v++tYeg+Hnh+
  Pta012966  3 VRKHVERASNDIKAVITTYEGKHNHD 28
               89***********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081115.227130IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-8230IPR003657WRKY domain
PfamPF031066.7E-5328IPR003657WRKY domain
SuperFamilySSF1182901.03E-5330IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
XSVRKHVERA SNDIKAVITT YEGKHNHDVP APRNSSHDSA GPGSQFHAAN NAITSSSLPK  60
PSAISLLDQQ AGKYPSSSGW SRTEGQDMNS QGVKGAIPLR TVRPKEEPDT TSVPTGL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027330832.16e-17probable WRKY transcription factor 20 isoform X1
RefseqXP_027330833.17e-17probable WRKY transcription factor 20 isoform X2
RefseqXP_027330834.16e-17probable WRKY transcription factor 20 isoform X3
TrEMBLH9V5Q73e-69H9V5Q7_PINTA; Uncharacterized protein (Fragment)
STRINGAquca_005_00231.15e-16(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.12e-14WRKY DNA-binding protein 3