PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta013132

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

BBR-BPC

Protein Properties

Length: 98aa MW: 11100 Da PI: 4.8337

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S15780509	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	47.2	8.5e-15	20	92	17	89
GAGA_bind 17 aaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllven 89 ++ lk+ l+l+s +erda irer+ a++ekk a+ae+ a++qrd+a+a+r++a++erd +++al+ +++ Pta013132 20 EKCLKDYAMLRLISAKTERDAVIRERDKAIAEKKIALAEKXAAYAQRDAAFAQRDEAIMERDAAFAALENAKD 92 367999999**********************************************************998765 PP

Sequence ? help Back to Top
Protein Sequence Length: 98 aa Download sequence Send to blast
MDDEDRKGVH PALNDEPLDE KCLKDYAMLR LISAKTERDA VIRERDKAIA EKKIALAEKX 60 AAYAQRDAAF AQRDEAIMER DAAFAALENA KDERNRGX

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.8173	1e-165	xylem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020522700.1	4e-20	barley B recombinant-like protein D isoform X1
Swissprot	Q5VSA8	1e-15	BBRD_ORYSJ; Barley B recombinant-like protein D
TrEMBL	A0A2D1VJG0	9e-59	A0A2D1VJG0_PINSY; Uncharacterized protein (Fragment)
TrEMBL	A0A2D1VJJ0	9e-59	A0A2D1VJJ0_PINPS; Uncharacterized protein (Fragment)
TrEMBL	K7P2W7	9e-59	K7P2W7_PINMU; Uncharacterized protein (Fragment)
STRING	ERN05777	3e-19	(Amborella trichopoda)

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]