PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta013345

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

NAC

Protein Properties

Length: 186aa MW: 20678.6 Da PI: 7.0565

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S24109293	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	148.3	3.9e-46	15	153	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.........kvka..eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 +GfrFhPtdeel+++yL+kkv+++ l++ ++i+++d y+++PwdLp k a +e+ewyfFs+rd++y++g r+nra+ sgyWk tg+d Pta013345 15 LVGFRFHPTDEELITHYLEKKVSSSALPA-SIIADIDPYQHDPWDLPVfqlficvsaK--AlfGENEWYFFSRRDREYPSGARPNRAAGSGYWKVTGSDI 111 68*************************.89***********55799977543..245999****************************** PP NAM 91 evlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++s + ++vg+kk+ vfykg+ +g+ t+W+mhey l Pta013345 112 PIVSMsgstSPRKVGVKKSVVFYKGKGGEGVMTNWIMHEYCL 153 9955554555**************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.02E-49	10	158	IPR003441	NAC domain
PROSITE profile	PS51005	47.18	14	174	IPR003441	NAC domain
Pfam	PF02365	2.1E-25	16	153	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MEGVAFQQQA VPELLVGFRF HPTDEELITH YLEKKVSSSA LPASIIADID PYQHDPWDLP 60 VFQLFICVSA KALFGENEWY FFSRRDREYP SGARPNRAAG SGYWKVTGSD IPIVSMSGST 120 SPRKVGVKKS VVFYKGKGGE GVMTNWIMHE YCLAQTLPTQ KEGSVPILKR MHGYGENAKM 180 VEGDGG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-50	3	153	2	140	Stress-induced transcription factor NAC1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.7217	0.0	embryo\| xylem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Up-regulated during anther and flower development and leaf senescence. {ECO:0000269\|PubMed:22278768}.
Uniprot	TISSUE SPECIFICITY: Highest expression in stamens. Expressed in leaves. {ECO:0000269\|PubMed:18813954, ECO:0000269\|PubMed:22278768}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269\|PubMed:22278768}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269\|PubMed:18813954}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019453752.1	3e-60	PREDICTED: NAC transcription factor 56-like
Refseq	XP_019464935.1	2e-60	PREDICTED: NAC transcription factor 56-like
Swissprot	Q8H4S4	8e-59	NAC10_ORYSJ; NAC domain-containing protein 10
TrEMBL	D5ABS0	1e-68	D5ABS0_PICSI; Uncharacterized protein
STRING	XP_010485778.1	5e-58	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.2	1e-60	NAC domain containing protein 47

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]