PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC10044_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Trihelix

Protein Properties

Length: 113aa MW: 13055 Da PI: 9.9481

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC10044_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	68.5	1.3e-21	46	109	1	64
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykki 64 +W+ +e+++ + +r+e+++++ ++k+ k lWe v++km+++gf rs++qCk+kw+nl rykk RrC10044_p2 46 QWSIDETKEFLGIREELDQTFMEAKRTKLLWEVVAAKMADKGFARSAEQCKSKWKNLVARYKKY 109 7*************************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	1.24E-21	45	108	No hit	No description
Pfam	PF13837	4.1E-17	46	109	No hit	No description
PROSITE profile	PS50090	7.538	47	103	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 113 aa Download sequence Send to blast
MDRRNPFHHH HQLHHLIQQQ QLPPPPQSTT VAMDLGGGGG GERIPQWSID ETKEFLGIRE 60 ELDQTFMEAK RTKLLWEVVA AKMADKGFAR SAEQCKSKWK NLVARYKKYA ISF

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269\|PubMed:15044016}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC240935	1e-131	AC240935.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrF042C17, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009130657.1	2e-52	PREDICTED: trihelix transcription factor GT-3a-like
Refseq	XP_013740024.1	2e-52	trihelix transcription factor GT-3a
Swissprot	Q9SDW0	2e-38	TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBL	A0A397ZQE1	1e-52	A0A397ZQE1_BRACM; Uncharacterized protein
STRING	Bo3g001460.1	3e-51	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2215	28	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	2e-40	Trihelix family protein