PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC10120_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

CAMTA

Protein Properties

Length: 725aa MW: 81347.1 Da PI: 6.3008

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC10120_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	162	1.1e-50	30	146	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 +e +rwl+++ei+a+L n++ +++ ++ + pksg++++++rk++r+frkDG++wkkkkdgkt++E+he+LKvg+ e +++yYah+++nptf rrcy RrC10120_p1 30 EEaYTRWLRPNEIHALLSNHNYFTINVKPVHLPKSGTILFFDRKMLRNFRKDGHNWKKKKDGKTIKEAHEHLKVGNEERIHVYYAHGDDNPTFVRRCY 127 55589******************************************************************************************* PP CG-1 100 wlLeeelekivlvhylevk 118 wlL++++e+ivlvhy+e++ RrC10120_p1 128 WLLDKSQEHIVLVHYRETH 146 **************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	75.573	25	151	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	3.1E-73	28	146	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	5.6E-45	32	144	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	3.36E-14	368	454	IPR014756	Immunoglobulin E-set
Pfam	PF12796	7.2E-7	554	634	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.4E-15	555	667	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	2.18E-15	563	670	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.80E-12	570	664	No hit	No description
PROSITE profile	PS50297	13.761	572	637	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	2.7E-6	605	634	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.808	605	637	IPR002110	Ankyrin repeat

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 725 aa Download sequence Send to blast
MAGVDSARLI GSEIHGFHTL QDLDIKTMLE EAYTRWLRPN EIHALLSNHN YFTINVKPVH 60 LPKSGTILFF DRKMLRNFRK DGHNWKKKKD GKTIKEAHEH LKVGNEERIH VYYAHGDDNP 120 TFVRRCYWLL DKSQEHIVLV HYRETHEVQA APATPGNSYS SSTTDHLSAK PLAEDNNSGV 180 RNPARSNSLV ARNHEISLHE INTLDWDELL VEADISNQPS PTEDDVLYFT EQLQTAPMGS 240 AQQGNHHAVY NGSTDIPSYL GLGDHVYQNN SPCGAREFSS QHLHCVVDPN QQTRDPSAAV 300 ANEQGDALLN NGYGSQESFG KWVNNFISDS PGSVDDPSLE AVYTPGQESS APPAVFHPQS 360 NIPEQIFNIT DVSPAWAYST EKTKILVTGF FHDSFQHFGR SNLFCICGEV RVPAEFLQMG 420 VYRCFLPPQS PGIVNLYLSA DGTKPISQLF SFEHRSVPVI EKVAPQEDQL YKWEEFEFQV 480 RLAHLLFTSS NKISVFSSKI SPDNLLEAKK LASRTSHLLN SWAYLMKSIQ ANEVPFDQAR 540 DHLFELTLKN RLKEWLLEKV IEDRNTKEYD SKGLGVIHLC AVLGYTWSIL LFSWANISLD 600 FRDKHGWTAL HWAAYYGREK MVAALLSAGA RPNLVTDPTK EYLGGCTAAD IAQQKGYEGL 660 AAFLAEKCLV AQFRDMKMAG NISGNLEGIK AETSANPGHS NEEEQSLKDT LGRRGGCTDP 720 GSFQR

Sequence ? help Back to Top

Protein Sequence Length: 725 aa Download sequence Send to blast

MAGVDSARLI GSEIHGFHTL QDLDIKTMLE EAYTRWLRPN EIHALLSNHN YFTINVKPVH  60
LPKSGTILFF DRKMLRNFRK DGHNWKKKKD GKTIKEAHEH LKVGNEERIH VYYAHGDDNP  120
TFVRRCYWLL DKSQEHIVLV HYRETHEVQA APATPGNSYS SSTTDHLSAK PLAEDNNSGV  180
RNPARSNSLV ARNHEISLHE INTLDWDELL VEADISNQPS PTEDDVLYFT EQLQTAPMGS  240
AQQGNHHAVY NGSTDIPSYL GLGDHVYQNN SPCGAREFSS QHLHCVVDPN QQTRDPSAAV  300
ANEQGDALLN NGYGSQESFG KWVNNFISDS PGSVDDPSLE AVYTPGQESS APPAVFHPQS  360
NIPEQIFNIT DVSPAWAYST EKTKILVTGF FHDSFQHFGR SNLFCICGEV RVPAEFLQMG  420
VYRCFLPPQS PGIVNLYLSA DGTKPISQLF SFEHRSVPVI EKVAPQEDQL YKWEEFEFQV  480
RLAHLLFTSS NKISVFSSKI SPDNLLEAKK LASRTSHLLN SWAYLMKSIQ ANEVPFDQAR  540
DHLFELTLKN RLKEWLLEKV IEDRNTKEYD SKGLGVIHLC AVLGYTWSIL LFSWANISLD  600
FRDKHGWTAL HWAAYYGREK MVAALLSAGA RPNLVTDPTK EYLGGCTAAD IAQQKGYEGL  660
AAFLAEKCLV AQFRDMKMAG NISGNLEGIK AETSANPGHS NEEEQSLKDT LGRRGGCTDP  720
GSFQR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY128295	0.0	AY128295.1 Arabidopsis thaliana AT4g16150/dl4115w mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018450972.1	0.0	PREDICTED: calmodulin-binding transcription activator 5
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A0D3DM50	0.0	A0A0D3DM50_BRAOL; Uncharacterized protein
STRING	Bo8g043280.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4021	27	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]