PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1012_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family AP2
Protein Properties Length: 411aa    MW: 44930.2 Da    PI: 8.549
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1012_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.35e-1093153355
         AP2   3 ykGV......rwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GV       +++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  RrC1012_p2  93 YRGVtslqnrDRHRWTGRYEAHLWDkTTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 153
                 777777777778*************6666777775555599******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103217.92592161IPR001471AP2/ERF domain
SMARTSM003802.6E-1592167IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-993162IPR001471AP2/ERF domain
PfamPF008471.4E-593153IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-11104162IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MTKTTSSPFI AIDSIVFGEK KRVIGGIVAS MSSSDQGPKT EAGGGESSET VAASDEMLMY  60
RGFKKAKKER GSTAKERISK MPPCTAGKRS SIYRGVTSLQ NRDRHRWTGR YEAHLWDKTT  120
WNQNQNKKGK QGAYDDEEAA ARAYDLAALK YWGPGTLINF PVTDYSRDLE EMQNLSREEY  180
LASLRAGDDR GTEGDFLGNF CLERKIDLTG YIKWWGVNKP RQPESSSSKA SEEAKVEDAG  240
TELKTLEHTS QATEPYKAPN LGVLQRKEKQ LSSSSPSSTQ PSALSILSAS PAYKSLEEKV  300
LKIQESSTSN TRENDENANR NIINMEKSHG KEIEKPVLSH GVALGGGGGV PAAAALSLQK  360
SSSMYPLTSL LTAPLLTNYN TLDPLGDPIL WTSFLPPGSS HTSERQAVPH T
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535341e-113AK353534.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-D01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018433279.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X2
SwissprotQ8GWK20.0AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A397ZWZ60.0A0A397ZWZ6_BRACM; Uncharacterized protein
STRINGBostr.11568s0008.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108152433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-152AP2 family protein