PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC101_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 210aa    MW: 24173.3 Da    PI: 9.933
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC101_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.45.8e-0696118123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++C+k F r  nL+ H r H
  RrC101_p2  96 FVCEICNKGFQRDQNLQLHKRGH 118
                89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.76E-795118No hitNo description
Gene3DG3DSA:3.30.160.603.1E-695118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01796118IPR015880Zinc finger, C2H2-like
PfamPF121711.4E-596118IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.90796118IPR007087Zinc finger, C2H2
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
SMARTSM00355120138168IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.2E-4161194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.76E-7168193No hitNo description
SMARTSM00355180173193IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MMSKDILLHQ QVQQQQQENM SNLTSASGDQ TSVSSGNRTE ASGSNYFPHH QQQEQQQFFV  60
PESQPQKKRR NQPGNPDPES EVISLSPKTL MATNRFVCEI CNKGFQRDQN LQLHKRGHNL  120
PWKLKQRPNK EVIRKKVYVC PEASCVHHDP SRALGDLTGI KKHFFRKHGE KKWKCDKCSK  180
KYAVQSDCKA HSKTCGTKEY RCDCGTIFSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-20169210344Zinc finger protein JACKDAW
5b3h_F7e-20169210344Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122135KLKQRPNKEVIRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3617970.0AF361797.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.
GenBankAY0916930.0AY091693.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018493474.11e-155PREDICTED: protein indeterminate-domain 11-like
RefseqXP_018493475.11e-155PREDICTED: protein indeterminate-domain 11-like
RefseqXP_018493476.11e-155PREDICTED: protein indeterminate-domain 11-like
RefseqXP_018493477.11e-155PREDICTED: protein indeterminate-domain 11-like
SwissprotQ9LRW71e-129IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLA0A3P6FI341e-137A0A3P6FI34_BRAOL; Uncharacterized protein
STRINGBo1g134920.11e-136(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.11e-108indeterminate(ID)-domain 11
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]