PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC10219_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Dof

Protein Properties

Length: 347aa MW: 37913.5 Da PI: 7.992

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC10219_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.4	1.8e-39	56	116	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k++a++cprC+stntkfCyynnysl+qPr+fCk+CrryWt+GG+lrn+PvGgg+rknk+s+ RrC10219_p1 56 KDQAINCPRCNSTNTKFCYYNNYSLTQPRFFCKGCRRYWTEGGSLRNIPVGGGSRKNKRSH 116 7899******************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	48	108	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.6E-33	57	114	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.537	60	114	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	62	98	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MVGRIDFCDF DDQEIVVKPL DQIVTNTCPN PQPSQPQQPP PAGAACGAER KARPEKDQAI 60 NCPRCNSTNT KFCYYNNYSL TQPRFFCKGC RRYWTEGGSL RNIPVGGGSR KNKRSHSSSI 120 SSSDISNNHS VSTQPAKKKH YSDQHHHHLV TMSQQGLTGQ NPKFLETTQQ DLNLGFPPDR 180 LNRTNFTDLI HNTGNNNKST NNTLLSSSFS ATSAMATSPL DFIRNNNSNN GNSSFMGFPV 240 HTQDPTSVGF SMQDHYKPCN SSTTLLGFSL DHHSNNDFPG GFQGGEGGDD VNGRPLFPFE 300 DLKLPVSSSS ATNNVDINDH QKRVSGGDAA ATSGGYWTGM LSGGSWR

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MVGRIDFCDF DDQEIVVKPL DQIVTNTCPN PQPSQPQQPP PAGAACGAER KARPEKDQAI  60
NCPRCNSTNT KFCYYNNYSL TQPRFFCKGC RRYWTEGGSL RNIPVGGGSR KNKRSHSSSI  120
SSSDISNNHS VSTQPAKKKH YSDQHHHHLV TMSQQGLTGQ NPKFLETTQQ DLNLGFPPDR  180
LNRTNFTDLI HNTGNNNKST NNTLLSSSFS ATSAMATSPL DFIRNNNSNN GNSSFMGFPV  240
HTQDPTSVGF SMQDHYKPCN SSTTLLGFSL DHHSNNDFPG GFQGGEGGDD VNGRPLFPFE  300
DLKLPVSSSS ATNNVDINDH QKRVSGGDAA ATSGGYWTGM LSGGSWR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009137416.1	0.0	PREDICTED: dof zinc finger protein DOF4.6-like
Refseq	XP_022570837.1	0.0	dof zinc finger protein DOF4.6-like
Swissprot	Q8LAP8	1e-156	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	A0A397L765	0.0	A0A397L765_BRACM; Uncharacterized protein
TrEMBL	M4DRV4	0.0	M4DRV4_BRARP; Uncharacterized protein
STRING	Bra019247.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3433	27	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	1e-137	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]