PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC10260_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Dof
Protein Properties Length: 222aa    MW: 24512.9 Da    PI: 6.8389
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC10260_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof105.72.5e-332177561
       zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                  + cprC+s+ntkfCyynny+ sqPry Ck+Crr+Wt+GG+lrnvP+Gg  rk k++
  RrC10260_p1 21 PRVCPRCNSDNTKFCYYNNYNASQPRYKCKNCRRHWTHGGTLRNVPIGGRGRKIKST 77
                 678**************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-211675IPR003851Zinc finger, Dof-type
PROSITE profilePS5088426.7012276IPR003851Zinc finger, Dof-type
PfamPF027011.7E-302276IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102460IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MDYSGLFVQD DNQVNEEKPP PRVCPRCNSD NTKFCYYNNY NASQPRYKCK NCRRHWTHGG  60
TLRNVPIGGR GRKIKSTRTD QACFPQVGSV ENQQVNHHQP FLHDQETNEF VGSSSSAAVV  120
GGNHFGSLPE FHGGMATNVP PFGSFPPMEA LNISDVSFQQ GYYDSGSIDL ICNPLVNQLT  180
GGSVVVGSDQ EDPNMWNQSF DNTLNMNHNA SSSGSKGHIS KH
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469713.11e-160PREDICTED: dof zinc finger protein DOF4.4-like
SwissprotQ9SUA91e-67DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLA0A3P5ZGJ51e-138A0A3P5ZGJ5_BRACM; Uncharacterized protein
STRINGBra013494.1-P1e-138(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.15e-66Dof-type zinc finger domain-containing protein